by default), which when enabled, indiscriminately invalidates all
column extents and performs the actual DELETE only on the AUX
column. The trade-off with this approach would now be that the
first SELECT for certain query patterns (those containing a WHERE
predicate) after the DELETE operation will slow down as the
invalidated column extent would need to be scanned again to set
the min/max values.
the DELETE operation. ColumnOp::readBlock() calls can cause writes
to database files when the active chunk list in ChunkManager is full.
Since non-AUX columns are read-only for the DELETE operation, we prevent
writes of compressed chunks and header for these columns by passing
an isReadOnly flag to CompFileData which indicates whether the column
is read-only or read-write.
Introduced UDF and stored prodecure.
usage:
set columnstore_s3_key='<s3_key>';
set columnstore_s3_secret='<s3_secret>';
set columnstore_s3_region='region';
and then use UDF
select columnstore_dataload("<tablename>", "<filename>", "<bucket>", "<db_name>");
for UDF db_name can be ommited, then current connection db will be used
or stored function
call calpontsys.columnstore_load_from_s3("<tablename>", "<filename>", "<bucket>", "<db_name>");
EM scaleability project has two parts: phase1 and phase2.
This is phase1 that brings EM index to speed up(from O(n) down
to the speed of boost::unordered_map) EM lookups looking for
<dbroot, oid, partition> tuple to turn it into LBID,
e.g. most bulk insertion meta info operations.
The basis is boost::shared_managed_object where EMIndex is
stored. Whilst it is not debug-friendly it allows to put a
nested structs into shmem. EMIndex has 3 tiers. Top down description:
vector of dbroots, map of oids to partition vectors, partition
vectors that have EM indices.
Separate EM methods now queries index before they do EM run.
EMIndex has a separate shmem file with the fixed id
MCS-shm-00060001.
The idea is relatively simple - encode prefixes of collated strings as
integers and use them to compute extents' ranges. Then we can eliminate
extents with strings.
The actual patch does have all the code there but miss one important
step: we do not keep collation index, we keep charset index. Because of
this, some of the tests in the bugfix suite fail and thus main
functionality is turned off.
The reason of this patch to be put into PR at all is that it contains
changes that made CHAR/VARCHAR columns unsigned. This change is needed in
vectorization work.
* Fix clang warnings
* Remove vim tab guides
* initialize variables
* 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length
* Fix ISO C++17 does not allow 'register' storage class specifier for outdated bison
* chars are unsigned on ARM, having if (ival < 0) always false
* chars are unsigned by default on ARM and comparison with -1 if always true
Part 1:
As part of MCOL-3776 to address synchronization issue while accessing
the fTimeZone member of the Func class, mutex locks were added to the
accessor and mutator methods. However, this slows down processing
of TIMESTAMP columns in PrimProc significantly as all threads across
all concurrently running queries would serialize on the mutex. This
is because PrimProc only has a single global object for the functor
class (class derived from Func in utils/funcexp/functor.h) for a given
function name. To fix this problem:
(1) We remove the fTimeZone as a member of the Func derived classes
(hence removing the mutexes) and instead use the fOperationType
member of the FunctionColumn class to propagate the timezone values
down to the individual functor processing functions such as
FunctionColumn::getStrVal(), FunctionColumn::getIntVal(), etc.
(2) To achieve (1), a timezone member is added to the
execplan::CalpontSystemCatalog::ColType class.
Part 2:
Several functors in the Funcexp code call dataconvert::gmtSecToMySQLTime()
and dataconvert::mySQLTimeToGmtSec() functions for conversion between seconds
since unix epoch and broken-down representation. These functions in turn call
the C library function localtime_r() which currently has a known bug of holding
a global lock via a call to __tz_convert. This significantly reduces performance
in multi-threaded applications where multiple threads concurrently call
localtime_r(). More details on the bug:
https://sourceware.org/bugzilla/show_bug.cgi?id=16145
This bug in localtime_r() caused processing of the Functors in PrimProc to
slowdown significantly since a query execution causes Functors code to be
processed in a multi-threaded manner.
As a fix, we remove the calls to localtime_r() from gmtSecToMySQLTime()
and mySQLTimeToGmtSec() by performing the timezone-to-offset conversion
(done in dataconvert::timeZoneToOffset()) during the execution plan
creation in the plugin. Note that localtime_r() is only called when the
time_zone system variable is set to "SYSTEM".
This fix also required changing the timezone type from a std::string to
a long across the system.
data types TEXT, CHAR, VARCHAR, FLOAT and DOUBLE are not yet supported by vectorized path
This patch introduces an example for Google benchmarking suite to measure a perf diff
b/w legacy scan/filtering code and the templated version
According to C++ spec:
If an inline function or variable (since C++17) with external linkage is defined
differently in different translation units, the behavior is undefined.
The undefined behaviour causes link errors for cpimport binary.
/usr/bin/ld: /tmp/cpimport.bin.av067N.ltrans0.ltrans.o:(.data.rel.ro+0x6c8):
undefined reference to `WriteEngine::ColumnOp::isEmptyRow(unsigned long*, unsigned char const*, int)'
The isEmptyRow method is defined as inline in the cpp file and not
inline in the header file. As the method is not used as part of an
external API by any of the callers, nor is it subclassed, mark it as a
normal (non virtual) *inline* member function.
* Adds CompressInterfaceLZ4 which uses LZ4 API for compress/uncompress.
* Adds CMake machinery to search LZ4 on running host.
* All methods which use static data and do not modify any internal data - become `static`,
so we can use them without creation of the specific object. This is possible, because
the header specification has not been modified. We still use 2 sections in header, first
one with file meta data, the second one with pointers for compressed chunks.
* Methods `compress`, `uncompress`, `maxCompressedSize`, `getUncompressedSize` - become
pure virtual, so we can override them for the other compression algos.
* Adds method `getChunkMagicNumber`, so we can verify chunk magic number
for each compression algo.
* Renames "s/IDBCompressInterface/CompressInterface/g" according to requirement.
* Introduce multigeneration aggregation
* Do not save unused part of RGDatas to disk
* Add IO error explanation (strerror)
* Reduce memory usage while aggregating
* introduce in-memory generations to better memory utilization
* Try to limit the qty of buckets at a low limit
* Refactor disk aggregation a bit
* pass calculated hash into RowAggregation
* try to keep some RGData with free space in memory
* do not dump more than half of rowgroups to disk if generations are
allowed, instead start a new generation
* for each thread shift the first processed bucket at each iteration,
so the generations start more evenly
* Unify temp data location
* Explicitly create temp subdirectories
whether disk aggregation/join are enabled or not
This patch:
1. Removes the option to declare uncompressed columns (set columnstore_compression_type = 0).
2. Ignores [COMMENT '[compression=0] option at table or column level (no error messages, just disregard).
3. Removes the option to set more than 2 extents per file (ExtentsPreSegmentFile).
4. Updates rebuildEM tool to support up to 10 dictionary extent per dictionary segment file.
5. Adds check for `DBRootStorageType` for rebuildEM tool.
6. Renamed rebuildEM to mcsRebuildEM.
mcsconfig.h and my_config.h have the following
pre-processor definitions:
1. Conflicting definitions coming from the standard cmake definitions:
- PACKAGE
- PACKAGE_BUGREPORT
- PACKAGE_NAME
- PACKAGE_STRING
- PACKAGE_TARNAME
- PACKAGE_VERSION
- VERSION
2. Conflicting definitions of other kinds:
- HAVE_STRTOLL - this is a dirt in MariaDB headers.
Should be fixed in the server code. my_config.h erroneously
performs "#define HAVE_STRTOLL" instead of "#define HAVE_STRTOLL 1".
in some cases. The former is not CMake compatible style. The latter is.
3. Non-conflicting definitions:
Otherwise, mcsconfig.h and my_config.h should be mutually compatible,
because both are generated by cmake on the same host machine. So
they should have exactly equal definitions like "HAVE_XXX", "SIZEOF_XXX", etc.
Observations:
- It's OK to include both mcsconfig.h and my_config.h providing that we
suppress duplicate definition of the above conflicting types #1 and #2.
- There is no a need to suppress duplicate definitions mentioned in #3,
as they are compatible!
- my_sys.h and m_ctype.h must always follow a CMake configuation header,
either my_config.h or mcsconfig.h (or both).
They must never be included without any preceeding configuration header.
This change make sure that we resolve conflicts by:
- either disallowing inclusion of mcsconfig.h and my_config.h
at the same time
- or by hiding conflicting definitions #1 and #2
(with their later restoring).
- also, by making sure that my_sys.h and m_ctype.h always follow
a CMake configuration file.
Details:
- idb_mysql.h can now only be included only after my_config.h
An attempt to use idb_mysql.h with mcsconfig.h instead of
my_config.h is caught by the "#error" preprocessor directive.
- mariadb_my_sys.h can now be only included after mcsconfig.h.
An attempt to use mariadb_my_sys.h without mcscofig.h
(e.g. with my_config.h) is also caught by "#error".
- collation.h now can now be included in two ways.
It now has the following effective structure:
#if defined(PREFER_MY_CONFIG_H) && defined(MY_CONFIG_H)
// Remember current conflicting definitions on the preprocessor stack
// Undefine current conflicting definitions
#endif
#include "mcsconfig.h"
#include "m_ctype.h"
#if defined(PREFER_MY_CONFIG_H) && defined(MY_CONFIG_H)
# Restore conflicting definitions from the preprocessor stack
#endif
and can be included as follows:
a. using only mcsconfig.h as a configuration header:
// my_config.h must not be included so far
#include "collation.h"
b. using my_config.h as the first included configuration file:
#define PREFER_MY_CONFIG_H // Force conflict resolution
#include "my_config.h" // can be included directly or indirectly
...
#include "collation.h"
Other changes:
- Adding helper header files
utils/common/mcsconfig_conflicting_defs_remember.h
utils/common/mcsconfig_conflicting_defs_restore.h
utils/common/mcsconfig_conflicting_defs_undef.h
to perform conflict resolution easier.
- Removing `#include "collation.h"` from a number of files,
as it's automatically included from rowgroup.h.
- Removing redundant `#include "utils_utf8.h"`.
This change is not directly related to the problem being fixed,
but it's nice to remove redundant directives for both collation.h
and utils_utf8.h from all the files that do not really need them.
(this change could probably have gone as a separate commit)
- Changing my_init() to MY_INIT(argv[0]) in the MCS services sources.
After the fix of the complitation failure it appeared that ColumnStore
services compiled with the debug build crash due to recent changes in
safemalloc. The crash happened in strcmp() with `my_progname` as an argument
(where my_progname is a mysys global variable). This problem should
probably be fixed on the server side as well to avoid passing NULL.
But, the majority of MariaDB executable programs also use MY_INIT(argv[0])
rather than my_init(). So let's make MCS do like the other programs do.
