diff --git a/README b/README
index 6e4f392054..5942a8feb6 100644
--- a/README
+++ b/README
@@ -17,15 +17,14 @@ For example:
     make                     ;#  Run the makefile.
     make install             ;#  (Optional) Install the build products
 
-The configure script uses autoconf 2.50 and libtool.  If the configure
+The configure script uses autoconf 2.61 and libtool.  If the configure
 script does not work out for you, there is a generic makefile named
 "Makefile.linux-gcc" in the top directory of the source tree that you
-can copy and edit to suite your needs.  Comments on the generic makefile
+can copy and edit to suit your needs.  Comments on the generic makefile
 show what changes are needed.
 
 The linux binaries on the website are created using the generic makefile,
-not the configure script.  The configure script is unmaintained.  (You
-can volunteer to take over maintenance of the configure script, if you want!)
+not the configure script.
 The windows binaries on the website are created using MinGW32 configured
 as a cross-compiler running under Linux.  For details, see the ./publish.sh
 script at the top-level of the source tree.
diff --git a/main.mk b/main.mk
index c8a9073f53..d8fa789559 100644
--- a/main.mk
+++ b/main.mk
@@ -92,7 +92,9 @@ SRC = \
   $(TOP)/src/btreeInt.h \
   $(TOP)/src/build.c \
   $(TOP)/src/callback.c \
+  $(TOP)/src/common.h \
   $(TOP)/src/complete.c \
+  $(TOP)/src/config.h \
   $(TOP)/src/date.c \
   $(TOP)/src/delete.c \
   $(TOP)/src/expr.c \
@@ -256,7 +258,9 @@ HDR = \
    $(TOP)/src/sqliteInt.h  \
    $(TOP)/src/sqliteLimit.h \
    $(TOP)/src/vdbe.h \
-   $(TOP)/src/vdbeInt.h 
+   $(TOP)/src/vdbeInt.h \
+   $(TOP)/src/common.h \
+   $(TOP)/src/config.h
 
 # Header files used by extensions
 #
diff --git a/manifest b/manifest
index 3f94a74966..ba25d60147 100644
--- a/manifest
+++ b/manifest
@@ -1,9 +1,9 @@
-C Typo\sin\samalgamation\snon-x86\sbuilds\s(CVS\s4831)
-D 2008-03-06T09:19:00
+C Handle\snon-autoconf\sbuild\scorrectly\swith\snew\schanges\s(CVS\s4832)
+D 2008-03-06T09:58:50
 F Makefile.arm-wince-mingw32ce-gcc ac5f7b2cef0cd850d6f755ba6ee4ab961b1fadf7
 F Makefile.in dbb064b7fca107aff4a722a3ee801af26dcda270
 F Makefile.linux-gcc d53183f4aa6a9192d249731c90dbdffbd2c68654
-F README 9c4e2d6706bdcc3efdd773ce752a8cdab4f90028
+F README b974cdc3f9f12b87e851b04e75996d720ebf81ac
 F VERSION 2e206fc9458bf10a8c3ba2d13bf521a04ef441c6
 F aclocal.m4 d20ba55930a05197b484809fba1d2b603f4e67a6
 F addopcodes.awk 701697fae48376375ec8532c3d04e910cfeef352
@@ -64,7 +64,7 @@ F ext/icu/README.txt 3b130aa66e7a681136f6add198b076a2f90d1e33
 F ext/icu/icu.c 12e763d288d23b5a49de37caa30737b971a2f1e2
 F install-sh 9d4de14ab9fb0facae2f48780b874848cbf2f895
 F ltmain.sh 56abb507100ed2d4261f6dd1653dec3cf4066387
-F main.mk 648992e13f77f6039b2824bd97c8853beea20dbd
+F main.mk b0efbefa019837607cdb16b63fdac6ff581dd957
 F mkdll.sh 712e74f3efe08a6ba12b2945d018a29a89d7fe3b
 F mkextu.sh 416f9b7089d80e5590a29692c9d9280a10dbad9f
 F mkextw.sh 1a866b53637dab137191341cc875575a5ca110fb
@@ -87,9 +87,9 @@ F src/btmutex.c 483ced3c52205b04b97df69161fadbf87f4f1ea2
 F src/btree.c 439e2684892d2b70996dc3c5fba25e07949e1d84
 F src/btree.h 19dcf5ad23c17b98855da548e9a8e3eb4429d5eb
 F src/btreeInt.h d7d2f4d9d7f2e72c455326d48b2b478b842a81f6
-F src/build.c 19990e2ce78806e854b5baaa18a77b540a476bbb
+F src/build.c fa70bc0fb02e4d08202dd6a752ab5f5df5676e50
 F src/callback.c 77b302b0d41468dcda78c70e706e5b84577f0fa0
-F src/common.h 25fa5524ee3d2617986a3ec1ba59fef195d2d009
+F src/common.h 8240a944830058663fd5825482a5d813b206fcb1
 F src/complete.c 4cf68fd75d60257524cbe74f87351b9848399131
 F src/config.h b60286b542f5284d529b659adcb9c9d25eecab20
 F src/config.h.in 276f8e51e2daf0a19136c28678ec93542ac0ebe7
@@ -98,10 +98,10 @@ F src/delete.c fa13c296262e89c32d28949f15be275e52d7f524
 F src/experimental.c 1b2d1a6cd62ecc39610e97670332ca073c50792b
 F src/expr.c e6fb42c6e55fd9526174b1cb8296b69a60a6688a
 F src/fault.c 049b88b8ba0a1db3240aeaf9695cd08b9a3ba9e1
-F src/func.c 6d6d4817b4597d2bd08cbc525ba29164eae6c4bc
+F src/func.c a4f06d8a1d7e4c8c8755a59d1310141b7c090bd9
 F src/hash.c 53655c312280211444bfe23af6490a460aec2980
 F src/hash.h 031cd9f915aff27e12262cb9eb570ac1b8326b53
-F src/insert.c 6c64040d218506562c30925e8fb2d41fc71e646b
+F src/insert.c 3eb3d0b739eb318c7435b9da35330e2e893e3b78
 F src/journal.c 807bed7a158979ac8d63953e1774e8d85bff65e2
 F src/legacy.c cb1939fdeb91ea88fb44fbd2768a10e14bc44650
 F src/limits.h 71ab25f17e35e0a9f3f6f234b8ed49cc56731d35
@@ -142,9 +142,9 @@ F src/server.c 087b92a39d883e3fa113cae259d64e4c7438bc96
 F src/shell.c 22297fffa6f00a6c6d44020fa13b1184a1bb372d
 F src/sqlite.h.in b8158aa606f0b39426d63132ae0530d91c021abb
 F src/sqlite3ext.h 50c70a894ffe8e6ada5948c89b91db0a80a6b2a7
-F src/sqliteInt.h 9dad69a38bab6d9284af99d57004c416437db76a
+F src/sqliteInt.h 3b4240e95002593b3ac6b87fd023c3de6b079df6
 F src/sqliteLimit.h ee4430f88f69bf63527967bb35ca52af7b0ccb1e
-F src/table.c c688f2679d3b2221bc122afdc6771fa34813493d
+F src/table.c 2c48c575dd59b3a6c5c306bc55f51a9402cf429a
 F src/tclsqlite.c d95e0e74c7167b2807f9f4f73bf45f7c58096297
 F src/test1.c c3d43a6bd299f3c115f6617af6715004819ca5cb
 F src/test2.c 355d5693ca3ee705548fa7f795592a37b2372b70
@@ -179,11 +179,11 @@ F src/vdbe.c a172f5134d19ae910134e28987bf7906523c9b6f
 F src/vdbe.h 58a7d931ffb704e034b2a725981cfa5bd406fad9
 F src/vdbeInt.h 76c81d057a39813de0fda3cad1498655d53ec69d
 F src/vdbeapi.c cf9fc963efae3cdf5de08e2a9718b487059c7fc5
-F src/vdbeaux.c e88a296bc64783efd4ea699fcac2f8cdbdc88a23
+F src/vdbeaux.c 83e34e38706889a16fbd77fce3777390d425af79
 F src/vdbeblob.c 63c750acc7b5012479f508c0e9627372a82cb65d
 F src/vdbefifo.c a30c237b2a3577e1415fb6e288cbb6b8ed1e5736
-F src/vdbemem.c 7812a0fa480bada1c661da76783d59099a4e3bf3
-F src/vtab.c 641bafa5d8ca9448307f0e2a389844a5c7f86728
+F src/vdbemem.c b77819155eb2f07bd369e590544e3b2ca4526745
+F src/vtab.c 00cd16317b29495c185ff40e4b227917d5a371b2
 F src/where.c c5eaca1f2d9caa20c5c7096434ccde2be03b325c
 F tclinstaller.tcl 4356d9d94d2b5ed5e68f9f0c80c4df3048dd7617
 F test/aggerror.test a867e273ef9e3d7919f03ef4f0e8c0d2767944f2
@@ -624,7 +624,7 @@ F www/tclsqlite.tcl 8be95ee6dba05eabcd27a9d91331c803f2ce2130
 F www/vdbe.tcl 87a31ace769f20d3627a64fa1fade7fed47b90d0
 F www/version3.tcl 890248cf7b70e60c383b0e84d77d5132b3ead42b
 F www/whentouse.tcl fc46eae081251c3c181bd79c5faef8195d7991a5
-P 9898320be05cdbe78dac799f3fef34dccb644ca8
-R 50f5338f0bca04916e37025aa0109e81
+P a8424e06064ee356db8231820737a7d5ba722873
+R 0021bc64720ffa75da297f69f183d54b
 U mlcreech
-Z c37d237b5c24169a3424e40b047eb89c
+Z fd997a43b8675ba941a31b1ef9bdb27a
diff --git a/manifest.uuid b/manifest.uuid
index 2b20f5f37a..45b7942900 100644
--- a/manifest.uuid
+++ b/manifest.uuid
@@ -1 +1 @@
-a8424e06064ee356db8231820737a7d5ba722873
\ No newline at end of file
+e2a9f5f1054f077e4773dd3d2c8f2ce5be118a01
\ No newline at end of file
diff --git a/src/build.c b/src/build.c
index c825a283c3..b5320c631a 100644
--- a/src/build.c
+++ b/src/build.c
@@ -22,7 +22,7 @@
 **     COMMIT
 **     ROLLBACK
 **
-** $Id: build.c,v 1.473 2008/03/06 07:35:22 mlcreech Exp $
+** $Id: build.c,v 1.474 2008/03/06 09:58:50 mlcreech Exp $
 */
 #include "sqliteInt.h"
 #include <ctype.h>
@@ -2283,7 +2283,7 @@ static void sqlite3RefillIndex(Parse *pParse, Index *pIndex, int memRootPage){
     regRowid = regIdxKey + pIndex->nColumn;
     j1 = sqlite3VdbeAddOp3(v, OP_IsNull, regIdxKey, 0, pIndex->nColumn);
     j2 = sqlite3VdbeAddOp4(v, OP_IsUnique, iIdx,
-                           0, regRowid, (char*)(intptr_t)regRecord, P4_INT32);
+                           0, regRowid, (char*)(sqlite3_intptr_t)regRecord, P4_INT32);
     sqlite3VdbeAddOp4(v, OP_Halt, SQLITE_CONSTRAINT, OE_Abort, 0,
                     "indexed columns are not unique", P4_STATIC);
     sqlite3VdbeJumpHere(v, j1);
diff --git a/src/common.h b/src/common.h
index 5805a7e192..22e4ea307c 100644
--- a/src/common.h
+++ b/src/common.h
@@ -11,7 +11,7 @@
 *************************************************************************
 ** Common includes/defines based on output of configure script
 **
-** @(#) $Id: common.h,v 1.1 2008/03/06 07:36:18 mlcreech Exp $
+** @(#) $Id: common.h,v 1.2 2008/03/06 09:58:50 mlcreech Exp $
 */
 #ifndef _COMMON_H_
 #define _COMMON_H_
@@ -47,11 +47,9 @@
 ** practically it's == sizeof(void *)).  We fall back to an int if this type
 ** isn't defined.
 */
-#ifndef HAVE_INTPTR_T
-  typedef int intptr_t;
-#endif
-#ifndef HAVE_UINTPTR_T
-  typedef unsigned int uintptr_t;
+#ifdef HAVE_INTPTR_T
+  typedef intptr_t sqlite3_intptr_t;
+# define __sqlite3_intptr_defined
 #endif
 
 #endif
diff --git a/src/func.c b/src/func.c
index 2c2a1d1894..027d8a4fea 100644
--- a/src/func.c
+++ b/src/func.c
@@ -16,7 +16,7 @@
 ** sqliteRegisterBuildinFunctions() found at the bottom of the file.
 ** All other code has file scope.
 **
-** $Id: func.c,v 1.185 2008/03/06 07:35:22 mlcreech Exp $
+** $Id: func.c,v 1.186 2008/03/06 09:58:50 mlcreech Exp $
 */
 #include "sqliteInt.h"
 #include <ctype.h>
@@ -875,7 +875,7 @@ static void trimFunc(
   const unsigned char *zIn;         /* Input string */
   const unsigned char *zCharSet;    /* Set of characters to trim */
   int nIn;                          /* Number of bytes in input */
-  intptr_t flags;                   /* 1: trimleft  2: trimright  3: trim */
+  sqlite3_intptr_t flags;           /* 1: trimleft  2: trimright  3: trim */
   int i;                            /* Loop counter */
   unsigned char *aLen;              /* Length of each character in zCharSet */
   unsigned char **azChar;           /* Individual characters in zCharSet */
@@ -916,7 +916,7 @@ static void trimFunc(
     }
   }
   if( nChar>0 ){
-    flags = (intptr_t)sqlite3_user_data(context);
+    flags = (sqlite3_intptr_t)sqlite3_user_data(context);
     if( flags & 1 ){
       while( nIn>0 ){
         int len;
@@ -1459,7 +1459,7 @@ void sqlite3RegisterBuiltinFunctions(sqlite3 *db){
     if( argType==0xff ){
       pArg = db;
     }else{
-      pArg = (void*)(intptr_t)argType;
+      pArg = (void*)(sqlite3_intptr_t)argType;
     }
     sqlite3CreateFunc(db, aFuncs[i].zName, aFuncs[i].nArg,
         aFuncs[i].eTextRep, pArg, aFuncs[i].xFunc, 0, 0);
@@ -1478,7 +1478,7 @@ void sqlite3RegisterBuiltinFunctions(sqlite3 *db){
   sqlite3AttachFunctions(db);
 #endif
   for(i=0; i<sizeof(aAggs)/sizeof(aAggs[0]); i++){
-    void *pArg = (void*)(intptr_t)aAggs[i].argType;
+    void *pArg = (void*)(sqlite3_intptr_t)aAggs[i].argType;
     sqlite3CreateFunc(db, aAggs[i].zName, aAggs[i].nArg, SQLITE_UTF8, 
         pArg, 0, aAggs[i].xStep, aAggs[i].xFinalize);
     if( aAggs[i].needCollSeq ){
diff --git a/src/insert.c b/src/insert.c
index f3807c56ec..52e5b3a18c 100644
--- a/src/insert.c
+++ b/src/insert.c
@@ -12,7 +12,7 @@
 ** This file contains C code routines that are called by the parser
 ** to handle INSERT statements in SQLite.
 **
-** $Id: insert.c,v 1.230 2008/03/06 07:35:22 mlcreech Exp $
+** $Id: insert.c,v 1.231 2008/03/06 09:58:50 mlcreech Exp $
 */
 #include "sqliteInt.h"
 
@@ -1193,7 +1193,8 @@ void sqlite3GenerateConstraintChecks(
     regR = sqlite3GetTempReg(pParse);
     sqlite3VdbeAddOp2(v, OP_SCopy, regRowid-hasTwoRowids, regR);
     j3 = sqlite3VdbeAddOp4(v, OP_IsUnique, baseCur+iCur+1, 0,
-                           regR, (char*)(intptr_t)aRegIdx[iCur], P4_INT32);
+                           regR, (char*)(sqlite3_intptr_t)aRegIdx[iCur],
+                           P4_INT32);
 
     /* Generate code that executes if the new index entry is not unique */
     assert( onError==OE_Rollback || onError==OE_Abort || onError==OE_Fail
diff --git a/src/sqliteInt.h b/src/sqliteInt.h
index aac130ad53..5876f9962f 100644
--- a/src/sqliteInt.h
+++ b/src/sqliteInt.h
@@ -11,7 +11,7 @@
 *************************************************************************
 ** Internal interface definitions for SQLite.
 **
-** @(#) $Id: sqliteInt.h,v 1.668 2008/03/06 09:19:00 mlcreech Exp $
+** @(#) $Id: sqliteInt.h,v 1.669 2008/03/06 09:58:50 mlcreech Exp $
 */
 #ifndef _SQLITEINT_H_
 #define _SQLITEINT_H_
@@ -21,7 +21,12 @@
 ** the SQLite source tree.
 */
 #ifdef SQLITE_STANDARD_BUILD
-#include "common.h"
+# include "common.h"
+#endif
+
+#ifndef __sqlite3_intptr_defined
+  /* Fallbacks if doing a standalone build... */
+  typedef int sqlite3_intptr_t;
 #endif
 
 /*
diff --git a/src/table.c b/src/table.c
index 42fb66f5fb..eac9168dd4 100644
--- a/src/table.c
+++ b/src/table.c
@@ -145,7 +145,7 @@ int sqlite3_get_table(
   res.azResult[0] = 0;
   rc = sqlite3_exec(db, zSql, sqlite3_get_table_cb, &res, pzErrMsg);
   assert( sizeof(res.azResult[0])>= sizeof(res.nData) );
-  res.azResult[0] = (char*)(intptr_t)res.nData;
+  res.azResult[0] = (char*)(sqlite3_intptr_t)res.nData;
   if( (rc&0xff)==SQLITE_ABORT ){
     sqlite3_free_table(&res.azResult[1]);
     if( res.zErrMsg ){
@@ -187,10 +187,10 @@ void sqlite3_free_table(
   char **azResult            /* Result returned from from sqlite3_get_table() */
 ){
   if( azResult ){
-    intptr_t i, n;
+    sqlite3_intptr_t i, n;
     azResult--;
     assert( azResult!=0 );
-    n = (intptr_t)azResult[0];
+    n = (sqlite3_intptr_t)azResult[0];
     for(i=1; i<n; i++){ if( azResult[i] ) sqlite3_free(azResult[i]); }
     sqlite3_free(azResult);
   }
diff --git a/src/vdbeaux.c b/src/vdbeaux.c
index cd6f793678..551c07180e 100644
--- a/src/vdbeaux.c
+++ b/src/vdbeaux.c
@@ -531,7 +531,7 @@ void sqlite3VdbeChangeP4(Vdbe *p, int addr, const char *zP4, int n){
   if( n==P4_INT32 ){
     /* Note: this cast is safe, because the origin data point was an int
     ** that was cast to a (const char *). */
-    pOp->p4.i = (int)(intptr_t)zP4;
+    pOp->p4.i = (int)(sqlite3_intptr_t)zP4;
     pOp->p4type = n;
   }else if( zP4==0 ){
     pOp->p4.p = 0;
diff --git a/src/vdbemem.c b/src/vdbemem.c
index 3bbb04c2b0..1bf3766646 100644
--- a/src/vdbemem.c
+++ b/src/vdbemem.c
@@ -922,7 +922,7 @@ const void *sqlite3ValueText(sqlite3_value* pVal, u8 enc){
   expandBlob(pVal);
   if( pVal->flags&MEM_Str ){
     sqlite3VdbeChangeEncoding(pVal, enc & ~SQLITE_UTF16_ALIGNED);
-    if( (enc & SQLITE_UTF16_ALIGNED)!=0 && 1==(1&(intptr_t)pVal->z) ){
+    if( (enc & SQLITE_UTF16_ALIGNED)!=0 && 1==(1&(sqlite3_intptr_t)pVal->z) ){
       assert( (pVal->flags & (MEM_Ephem|MEM_Static))!=0 );
       if( sqlite3VdbeMemMakeWriteable(pVal)!=SQLITE_OK ){
         return 0;
diff --git a/src/vtab.c b/src/vtab.c
index c86e85a8df..eec604b3c0 100644
--- a/src/vtab.c
+++ b/src/vtab.c
@@ -11,7 +11,7 @@
 *************************************************************************
 ** This file contains code used to help implement virtual tables.
 **
-** $Id: vtab.c,v 1.64 2008/03/06 07:35:22 mlcreech Exp $
+** $Id: vtab.c,v 1.65 2008/03/06 09:58:50 mlcreech Exp $
 */
 #ifndef SQLITE_OMIT_VIRTUALTABLE
 #include "sqliteInt.h"
@@ -611,7 +611,7 @@ int sqlite3VtabCallDestroy(sqlite3 *db, int iDb, const char *zTab)
 **
 ** The array is cleared after invoking the callbacks. 
 */
-static void callFinaliser(sqlite3 *db, intptr_t offset){
+static void callFinaliser(sqlite3 *db, sqlite3_intptr_t offset){
   int i;
   if( db->aVTrans ){
     for(i=0; i<db->nVTrans && db->aVTrans[i]; i++){
@@ -664,7 +664,7 @@ int sqlite3VtabSync(sqlite3 *db, int rc2){
 ** sqlite3.aVTrans array. Then clear the array itself.
 */
 int sqlite3VtabRollback(sqlite3 *db){
-  callFinaliser(db, (intptr_t)(&((sqlite3_module *)0)->xRollback));
+  callFinaliser(db, (sqlite3_intptr_t)(&((sqlite3_module *)0)->xRollback));
   return SQLITE_OK;
 }
 
@@ -673,7 +673,7 @@ int sqlite3VtabRollback(sqlite3 *db){
 ** sqlite3.aVTrans array. Then clear the array itself.
 */
 int sqlite3VtabCommit(sqlite3 *db){
-  callFinaliser(db, (intptr_t)(&((sqlite3_module *)0)->xCommit));
+  callFinaliser(db, (sqlite3_intptr_t)(&((sqlite3_module *)0)->xCommit));
   return SQLITE_OK;
 }