So we are having a race condition of three of threads, resulting in a
deadlock backoff in purge, which is unexpected.
More precisely, the following happens:
T1: NOCOPY ALTER TABLE begins, and eventually it holds MDL_SHARED_NO_WRITE
lock;
T2: FLUSH TABLES begins. it sets share->tdc->flushed = true
T3: purge on a record with virtual column begins. it is going to open a
table. MDL_SHARED_READ lock is acquired therefore.
Since share->tdc->flushed is set, it waits for a TDC purge end.
T1: is going to elevate MDL LOCK to exclusive and therefore has to set
other waiters to back off.
T3: receives VICTIM status, reports a DEADLOCK, sets OT_BACKOFF_AND_RETRY
to Open_table_context::m_action
My fix is to allow opening table in purge while flushing. It is already
done the same way in other maintainance facilities like REPAIR TABLE.
Another way would be making an actual backoff, but Open_table_context
does not allow to distinguish it from other failure types, which still
seem to be unexpected. Making this would require hacking into
Open_table_context interface for no benefit, in comparison to passing
MYSQL_OPEN_IGNORE_FLUSH during table open.
The easiest way to compile and test the server with UBSAN is to run:
./BUILD/compile-pentium64-ubsan
and then run mysql-test-run.
After this commit, one should be able to run this without any UBSAN
warnings. There is still a few compiler warnings that should be fixed
at some point, but these do not expose any real bugs.
The 'special' cases where we disable, suppress or circumvent UBSAN are:
- ref10 source (as here we intentionally do some shifts that UBSAN
complains about.
- x86 version of optimized int#korr() methods. UBSAN do not like unaligned
memory access of integers. Fixed by using byte_order_generic.h when
compiling with UBSAN
- We use smaller thread stack with ASAN and UBSAN, which forced me to
disable a few tests that prints the thread stack size.
- Verifying class types does not work for shared libraries. I added
suppression in mysql-test-run.pl for this case.
- Added '#ifdef WITH_UBSAN' when using integer arithmetic where it is
safe to have overflows (two cases, in item_func.cc).
Things fixed:
- Don't left shift signed values
(byte_order_generic.h, mysqltest.c, item_sum.cc and many more)
- Don't assign not non existing values to enum variables.
- Ensure that bool and enum values are properly initialized in
constructors. This was needed as UBSAN checks that these types has
correct values when one copies an object.
(gcalc_tools.h, ha_partition.cc, item_sum.cc, partition_element.h ...)
- Ensure we do not called handler functions on unallocated objects or
deleted objects.
(events.cc, sql_acl.cc).
- Fixed bugs in Item_sp::Item_sp() where we did not call constructor
on Query_arena object.
- Fixed several cast of objects to an incompatible class!
(Item.cc, Item_buff.cc, item_timefunc.cc, opt_subselect.cc, sql_acl.cc,
sql_select.cc ...)
- Ensure we do not do integer arithmetic that causes over or underflows.
This includes also ++ and -- of integers.
(Item_func.cc, Item_strfunc.cc, item_timefunc.cc, sql_base.cc ...)
- Added JSON_VALUE_UNITIALIZED to json_value_types and ensure that
value_type is initialized to this instead of to -1, which is not a valid
enum value for json_value_types.
- Ensure we do not call memcpy() when second argument could be null.
- Fixed that Item_func_str::make_empty_result() creates an empty string
instead of a null string (safer as it ensures we do not do arithmetic
on null strings).
Other things:
- Changed struct st_position to an OBJECT and added an initialization
function to it to ensure that we do not copy or use uninitialized
members. The change to a class was also motived that we used "struct
st_position" and POSITION randomly trough the code which was
confusing.
- Notably big rewrite in sql_acl.cc to avoid using deleted objects.
- Changed in sql_partition to use '^' instead of '-'. This is safe as
the operator is either 0 or 0x8000000000000000ULL.
- Added check for select_nr < INT_MAX in JOIN::build_explain() to
avoid bug when get_select() could return NULL.
- Reordered elements in POSITION for better alignment.
- Changed sql_test.cc::print_plan() to use pointers instead of objects.
- Fixed bug in find_set() where could could execute '1 << -1'.
- Added variable have_sanitizer, used by mtr. (This variable was before
only in 10.5 and up). It can now have one of two values:
ASAN or UBSAN.
- Moved ~Archive_share() from ha_archive.cc to ha_archive.h and marked
it virtual. This was an effort to get UBSAN to work with loaded storage
engines. I kept the change as the new place is better.
- Added in CONNECT engine COLBLK::SetName(), to get around a wrong cast
in tabutil.cpp.
- Added HAVE_REPLICATION around usage of rgi_slave, to get embedded
server to compile with UBSAN. (Patch from Marko).
- Added #ifdef for powerpc64 to avoid a bug in old gcc versions related
to integer arithmetic.
Changes that should not be needed but had to be done to suppress warnings
from UBSAN:
- Added static_cast<<uint16_t>> around shift to get rid of a LOT of
compiler warnings when using UBSAN.
- Had to change some '/' of 2 base integers to shift to get rid of
some compile time warnings.
Reviewed by:
- Json changes: Alexey Botchkov
- Charset changes in ctype-uca.c: Alexander Barkov
- InnoDB changes & Embedded server: Marko Mäkelä
- sql_acl.cc changes: Vicențiu Ciorbaru
- build_explain() changes: Sergey Petrunia
The reason for this is that Galera can lock LOCK_thd_data for a long time.
Instead of stalling any long running process, like alter or repair table,
because of progress reporting, ignore the progress reporting for this
call. Progress reporting will continue on the next call after the lock has
been released.
* reuse the loop in THD::abort_current_cond_wait, don't duplicate it
* find_thread_by_id should return whatever it has found, it's the
caller's task not to kill COM_DAEMON (if the caller's a killer)
and other minor changes
Some DML operations on tables having unique secondary keys cause scanning
in the secondary index, for instance to find potential unique key violations
in the seconday index. This scanning may involve GAP locking in the index.
As this locking happens also when applying replication events in high priority
applier threads, there is a probabality for lock conflicts between two wsrep
high priority threads.
This PR avoids lock conflicts of high priority wsrep threads, which do
secondary index scanning e.g. for duplicate key detection.
The actual fix is the patch in sql_class.cc:thd_need_ordering_with(), where
we allow relaxed GAP locking protocol between wsrep high priority threads.
wsrep high priority threads (replication appliers, replayers and TOI processors)
are ordered by the replication provider, and they will not need serializability
support gained by secondary index GAP locks.
PR contains also a mtr test, which exercises a scenario where two replication
applier threads have a false positive conflict in GAP of unique secondary index.
The conflicting local committing transaction has to replay, and the test verifies
also that the replaying phase will not conflict with the latter repllication applier.
Commit also contains new test scenario for galera.galera_UK_conflict.test,
where replayer starts applying after a slave applier thread, with later seqno,
has advanced to commit phase. The applier and replayer have false positive GAP
lock conflict on secondary unique index, and replayer should ignore this.
This test scenario caused crash with earlier version in this PR, and to fix this,
the secondary index uniquenes checking has been relaxed even further.
Now innodb trx_t structure has new member: bool wsrep_UK_scan, which is set to
true, when high priority thread is performing unique secondary index scanning.
The member trx_t::wsrep_UK_scan is defined inside WITH_WSREP directive, to make
it possible to prepare a MariaDB build where this additional trx_t member is
not present and is not used in the code base. trx->wsrep_UK_scan is set to true
only for the duration of function call for: lock_rec_lock() trx->wsrep_UK_scan
is used only in lock_rec_has_to_wait() function to relax the need to wait if
wsrep_UK_scan is set and conflicting transaction is also high priority.
Reviewed-by: Jan Lindström <jan.lindstrom@mariadb.com>
Server part:
kill_handlerton() was accessing thd->ha_data[] for some other thd,
while it could be concurrently modified by its owner thd.
protect thd->ha_data[] modifications with a mutex.
require this mutex when accessing thd->ha_data[] from kill_handlerton.
InnoDB part:
on close_connection, detach trx from thd before freeing the trx
This reverts the server part of the commit 775fccea0
but keeps InnoDB part (which reverted MDEV-17092 5530a93f4).
So after this both MDEV-23536 and MDEV-17092 are reverted,
and the original bug is resurrected.
A race condition may occur between the execution of transaction commit,
and an execution of a KILL statement that would attempt to abort that
transaction.
MDEV-17092 worked around this race condition by modifying InnoDB code.
After that issue was closed, Sergey Vojtovich pointed out that this
race condition would better be fixed above the storage engine layer:
If you look carefully into the above, you can conclude that
thd->free_connection() can be called concurrently with
KILL/thd->awake(). Which is the bug. And it is partially fixed in
THD::~THD(), that is destructor waits for KILL completion:
Fix: Add necessary mutex operations to THD::free_connection()
and move WSREP specific code also there. This ensures that no
one is using THD while we do free_connection(). These mutexes
will also ensures that there can't be concurrent KILL/THD::awake().
innobase_kill_query
We can now remove usage of trx_sys_mutex introduced on MDEV-17092.
trx_t::free()
Poison trx->state and trx->mysql_thd
This patch is validated with an RQG run similar to the one that
reproduced MDEV-17092.
Analysis: select into outfile creates files everytime with 666 permission,
regardsless if umask environment variables and umask settings on OS level.
It seems hardcoded.
Fix: change 0666 to 0644 which will let anybody consume the file but not
change it.
The reason for the failure is that
thd->mdl_context.release_transactional_locks()
was called after commit & rollback even in cases where the current
transaction is still active.
For 10.2, 10.3 and 10.4 the fix is simple:
- Replace all calls to thd->mdl_context.release_transactional_locks() with
thd->release_transactional_locks(). The thd function will only call
the mdl_context function if there are no active transactional locks.
In 10.6 we will better fix where we will change the return value for
some trans_xxx() functions to indicate if transaction did close the
transaction or not. This will avoid the need of the indirect call.
Other things:
- trans_xa_commit() and trans_xa_rollback() will automatically
call release_transactional_locks() if the transaction is closed.
- We can't do that for the other functions as the caller of many of these
are doing additional work (like close_thread_tables) before calling
release_transactional_locks().
- Added missing abort_result_set() and missing DBUG_RETURN in
select_create::send_eof()
- Fixed wrong indentation in injector::transaction::commit()
This follows up commit
commit 94a520ddbe and
commit 7c5519c12d.
After these changes, the default test suites on a
cmake -DWITH_UBSAN=ON build no longer fail due to passing
null pointers as parameters that are declared to never be null,
but plenty of other runtime errors remain.
MDEV-20945: BACKUP UNLOCK + FTWRL assertion failure | SIGSEGV in I_P_List
from MDL_context::release_lock on INSERT w/ BACKUP LOCK (on optimized
builds) | Assertion `ticket->m_duration == MDL_EXPLICIT' failed
BACKUP LOCK behavior is modified so it won't be used wrong:
- BACKUP LOCK should commit any active transactions.
- BACKUP LOCK should not be allowed in stored procedures.
- When BACKUP LOCK is active, don't allow any DDL's for that connection.
- FTWRL is forbidden on the same connection while BACKUP LOCK is active.
Reviewed-by: monty@mariadb.com
This commit fixed the problems with S3 after the "DROP TABLE FORCE" changes.
It also fixes all failing replication S3 tests.
A slave is delayed if it is trying to execute replicated queries on a
table that is already converted to S3 by the master later in the binlog.
Fixes for replication events on S3 tables for delayed slaves:
- INSERT and INSERT ... SELECT and CREATE TABLE are ignored but written
to the binary log. UPDATE & DELETE will be fixed in a future commit.
Other things:
- On slaves with --s3-slave-ignore-updates set, allow S3 tables to be
opened in read-write mode. This was done to be able to
ignore-but-replicate queries like insert. Without this change any
open of an S3 table failed with 'Table is read only' which is too
early to be able to replicate the original query.
- Errors are now printed if handler::extra() call fails in
wait_while_tables_are_used().
- Error message for row changes are changed from HA_ERR_WRONG_COMMAND
to HA_ERR_TABLE_READONLY.
- Disable some maria_extra() calls for S3 tables. This could cause
S3 tables to fail in some cases.
- Added missing thr_lock_delete() to ma_open() in case of failure.
- Removed from mysql_prepare_insert() the not needed argument 'table'.
MDEV-21953 deadlock between BACKUP STAGE BLOCK_COMMIT and parallel
replication
Fixed by partly reverting MDEV-21953 to put back MDL_BACKUP_COMMIT locking
before log_and_order.
The original problem for MDEV-21953 was that while a thread was waiting in
for another threads to commit in 'log_and_order', it had the
MDL_BACKUP_COMMIT lock. The backup thread was waiting to get the
MDL_BACKUP_WAIT_COMMIT lock, which blocks all new MDL_BACKUP_COMMIT locks.
This causes a deadlock as the waited-for thread can never get past the
MDL_BACKUP_COMMIT lock in ha_commit_trans.
The main part of the bug fix is to release the MDL_BACKUP_COMMIT lock while
a thread is waiting for other 'previous' threads to commit. This ensures
that no transactional thread keeps MDL_BACKUP_COMMIT while waiting, which
ensures that there are no deadlocks anymore.
Protocol_local fixed so it can be used now.
Some Protocol:: methods made virtual so they can adapt.
as well as net_ok and net_send_error functions.
execute_sql_string function is exported to the plugins.
To be changed with the mysql_use_result.
- Adding optional qualifiers to data types:
CREATE TABLE t1 (a schema.DATE);
Qualifiers now work only for three pre-defined schemas:
mariadb_schema
oracle_schema
maxdb_schema
These schemas are virtual (hard-coded) for now, but may turn into real
databases on disk in the future.
- mariadb_schema.TYPE now always resolves to a true MariaDB data
type TYPE without sql_mode specific translations.
- oracle_schema.DATE translates to MariaDB DATETIME.
- maxdb_schema.TIMESTAMP translates to MariaDB DATETIME.
- Fixing SHOW CREATE TABLE to use a qualifier for a data type TYPE
if the current sql_mode translates TYPE to something else.
The above changes fix the reported problem, so this script:
SET sql_mode=ORACLE;
CREATE TABLE t2 AS SELECT mariadb_date_column FROM t1;
is now replicated as:
SET sql_mode=ORACLE;
CREATE TABLE t2 (mariadb_date_column mariadb_schema.DATE);
and the slave can unambiguously treat DATE as the true MariaDB DATE
without ORACLE specific translation to DATETIME.
Similar,
SET sql_mode=MAXDB;
CREATE TABLE t2 AS SELECT mariadb_timestamp_column FROM t1;
is now replicated as:
SET sql_mode=MAXDB;
CREATE TABLE t2 (mariadb_timestamp_column mariadb_schema.TIMESTAMP);
so the slave treats TIMESTAMP as the true MariaDB TIMESTAMP
without MAXDB specific translation to DATETIME.