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the begginning

This commit is contained in:
david hill
2016-01-06 14:08:59 -06:00
parent 66a31debcb
commit f6afc42dd0
18251 changed files with 16460679 additions and 2 deletions

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/* Copyright (C) 2014 InfiniDB, Inc.
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; version 2 of
the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
MA 02110-1301, USA. */
#define _CRT_RAND_S //for win rand_s
#include <unistd.h>
#include <boost/filesystem.hpp>
#include "configcpp.h"
#include "joinpartition.h"
#include "tuplejoiner.h"
#include "atomicops.h"
using namespace std;
using namespace utils;
using namespace rowgroup;
using namespace messageqcpp;
using namespace logging;
#ifdef _MSC_VER
namespace {
// returns a value between 0 and RAND_MAX (on Linux this is the max signed int)
int rand_r(unsigned int* seedp)
{
unsigned int randval=0;
rand_s(&randval); //returns 0 if okay, 0<=randval<UINT_MAX
// should implicitly cast to signed okay here...
return randval;
}
}
#endif
namespace joiner {
uint64_t uniqueNums = 0;
JoinPartition::JoinPartition() { }
/* This is the ctor used by THJS */
JoinPartition::JoinPartition(const RowGroup &lRG,
const RowGroup &sRG,
const vector<uint32_t> &smallKeys,
const vector<uint32_t> &largeKeys,
bool typeless,
bool antiWMN,
bool hasFEFilter,
uint64_t totalUMMemory,
uint64_t partitionSize) :
smallRG(sRG), largeRG(lRG),
smallKeyCols(smallKeys), largeKeyCols(largeKeys), typelessJoin(typeless),
nextPartitionToReturn(0), htSizeEstimate(0), htTargetSize(partitionSize), rootNode(true),
antiWithMatchNulls(antiWMN), needsAllNullRows(hasFEFilter), gotNullRow(false),
totalBytesRead(0), totalBytesWritten(0), maxLargeSize(0), maxSmallSize(0),
nextSmallOffset(0), nextLargeOffset(0)
{
config::Config *config = config::Config::makeConfig();
string cfgTxt;
smallSizeOnDisk = largeSizeOnDisk = 0;
/* Debugging, rand() is used to simulate failures
time_t t = time(NULL);
srand(t);
*/
cfgTxt = config->getConfig("HashJoin", "TempFileCompression");
if (cfgTxt == "n" || cfgTxt == "N")
useCompression = false;
else
useCompression = true;
fileMode = false;
uniqueID = atomicops::atomicInc(&uniqueNums);
uint32_t tmp = uniqueID;
hashSeed = rand_r(&tmp);
hashSeed = hasher((char *) &hashSeed, sizeof(hashSeed), uniqueID);
hashSeed = hasher.finalize(hashSeed, sizeof(hashSeed));
// start with initial capacity = 2 * totalUMMemory
bucketCount = (totalUMMemory * 2)/htTargetSize + 1;
largeRG.initRow(&largeRow);
smallRG.initRow(&smallRow);
buckets.reserve(bucketCount);
for (int i = 0; i < (int) bucketCount; i++)
buckets.push_back(boost::shared_ptr<JoinPartition>(new JoinPartition(*this, false)));
}
/* Ctor used by JoinPartition on expansion, creates JP's in filemode */
JoinPartition::JoinPartition(const JoinPartition &jp, bool splitMode) :
smallRG(jp.smallRG), largeRG(jp.largeRG),
smallKeyCols(jp.smallKeyCols), largeKeyCols(jp.largeKeyCols),
typelessJoin(jp.typelessJoin), bucketCount(jp.bucketCount),
smallRow(jp.smallRow), largeRow(jp.largeRow),
nextPartitionToReturn(0), htSizeEstimate(0), htTargetSize(jp.htTargetSize),
rootNode(false), antiWithMatchNulls(jp.antiWithMatchNulls),
needsAllNullRows(jp.needsAllNullRows), gotNullRow(false),
useCompression(jp.useCompression), totalBytesRead(0),
totalBytesWritten(0), maxLargeSize(0), maxSmallSize(0),
nextSmallOffset(0), nextLargeOffset(0)
{
config::Config *config = config::Config::makeConfig();
boost::posix_time::ptime t;
ostringstream os;
fileMode = true;
// tuning issue: with the defaults, each 100MB bucket would split s.t. the children
// could store another 4GB total. Given a good hash and evenly distributed data,
// the first level of expansion would happen for all JPs at once, giving a total
// capacity of (4GB * 40) = 160GB, when actual usage at that point is a little over 4GB.
// Instead, each will double in size, giving a capacity of 8GB -> 16 -> 32, and so on.
// bucketCount = jp.bucketCount;
bucketCount = 2;
filenamePrefix = config->getConfig("HashJoin", "TempFilePath");
if (filenamePrefix.empty())
filenamePrefix = "/tmp/infinidb";
filenamePrefix += "/Infinidb-join-data-";
uniqueID = atomicops::atomicInc(&uniqueNums);
uint32_t tmp = uniqueID;
hashSeed = rand_r(&tmp);
hashSeed = hasher((char *) &hashSeed, sizeof(hashSeed), uniqueID);
hashSeed = hasher.finalize(hashSeed, sizeof(hashSeed));
os << filenamePrefix << uniqueID;
filenamePrefix = os.str();
smallFilename = filenamePrefix + "-small";
largeFilename = filenamePrefix + "-large";
smallSizeOnDisk = largeSizeOnDisk = 0;
buffer.reinit(smallRG);
smallRG.setData(&buffer);
smallRG.resetRowGroup(0);
smallRG.getRow(0, &smallRow);
}
JoinPartition::~JoinPartition()
{
if (fileMode) {
smallFile.close();
largeFile.close();
boost::filesystem::remove(smallFilename);
boost::filesystem::remove(largeFilename);
}
}
int64_t JoinPartition::insertSmallSideRGData(RGData &rgData)
{
int64_t ret;
ret = processSmallBuffer(rgData);
return ret;
}
int64_t JoinPartition::insertSmallSideRGData(vector<RGData> &rgData)
{
int64_t ret = 0;
// this iterates over the vector backward to free mem asap
while (rgData.size() > 0) {
ret += insertSmallSideRGData(rgData.back());
rgData.pop_back();
}
return ret;
}
int64_t JoinPartition::insertSmallSideRow(const Row &row)
{
int64_t ret = 0;
copyRow(row, &smallRow);
smallRG.incRowCount();
if (smallRG.getRowCount() == 8192)
ret = processSmallBuffer();
else
smallRow.nextRow();
return ret;
}
int64_t JoinPartition::insertLargeSideRGData(RGData &rgData)
{
int64_t ret;
ret = processLargeBuffer(rgData);
return ret;
}
int64_t JoinPartition::insertLargeSideRow(const Row &row)
{
int64_t ret = 0;
copyRow(row, &largeRow);
largeRG.incRowCount();
if (largeRG.getRowCount() == 8192)
ret = processLargeBuffer();
else
largeRow.nextRow();
return ret;
}
int64_t JoinPartition::doneInsertingSmallData()
{
/*
flush buffers to leaf nodes
config for large-side insertion
*/
int64_t ret = 0;
int64_t leafNodeIncrement;
/* flushing doesn't apply to the root node b/c it inserts entire RGs at once */
if (!rootNode)
ret = processSmallBuffer();
if (!fileMode)
for (int i = 0; i < (int) buckets.size(); i++) {
leafNodeIncrement = buckets[i]->doneInsertingSmallData();
ret += leafNodeIncrement;
smallSizeOnDisk += leafNodeIncrement;
}
//else
// cout << uniqueID << " htsizeestimate = " << htSizeEstimate << endl;
if (!rootNode) {
buffer.reinit(largeRG);
largeRG.setData(&buffer);
largeRG.resetRowGroup(0);
largeRG.getRow(0, &largeRow);
}
if (maxSmallSize < smallSizeOnDisk)
maxSmallSize = smallSizeOnDisk;
return ret;
}
int64_t JoinPartition::doneInsertingLargeData()
{
/*
flush buffers to leaf nodes
*/
int64_t ret = 0;
int64_t leafNodeIncrement;
/* flushing doesn't apply to the root node b/c it inserts entire RGs at once */
if (!rootNode)
ret = processLargeBuffer();
if (!fileMode)
for (int i = 0; i < (int) buckets.size(); i++) {
leafNodeIncrement = buckets[i]->doneInsertingLargeData();
ret += leafNodeIncrement;
largeSizeOnDisk += leafNodeIncrement;
}
if (maxLargeSize < largeSizeOnDisk)
maxLargeSize = largeSizeOnDisk;
return ret;
}
int64_t JoinPartition::convertToSplitMode()
{
int i, j;
ByteStream bs;
RGData rgData;
uint32_t hash;
uint64_t tmp;
int64_t ret = -(int64_t)smallSizeOnDisk; // smallFile gets deleted
boost::scoped_array<uint32_t> rowDist(new uint32_t[bucketCount]);
uint32_t rowCount = 0;
memset(rowDist.get(), 0, sizeof(uint32_t) * bucketCount);
fileMode = false;
htSizeEstimate = 0;
smallSizeOnDisk = 0;
buckets.reserve(bucketCount);
for (i = 0; i < (int) bucketCount; i++)
buckets.push_back(boost::shared_ptr<JoinPartition>(new JoinPartition(*this, false)));
RowGroup &rg = smallRG;
Row &row = smallRow;
nextSmallOffset = 0;
while (1) {
readByteStream(0, &bs);
if (bs.length() == 0)
break;
rgData.deserialize(bs);
rg.setData(&rgData);
for (j = 0; j < (int) rg.getRowCount(); j++) {
rg.getRow(j, &row);
if (antiWithMatchNulls && hasNullJoinColumn(row)) {
if (needsAllNullRows || !gotNullRow) {
for (j = 0; j < (int) bucketCount; j++)
ret += buckets[j]->insertSmallSideRow(row);
gotNullRow = true;
}
continue;
}
if (typelessJoin)
hash = getHashOfTypelessKey(row, smallKeyCols, hashSeed) % bucketCount;
else {
if (UNLIKELY(row.isUnsigned(smallKeyCols[0])))
tmp = row.getUintField(smallKeyCols[0]);
else
tmp = row.getIntField(smallKeyCols[0]);
hash = hasher((char *) &tmp, 8, hashSeed);
hash = hasher.finalize(hash, 8) % bucketCount;
}
rowCount++;
rowDist[hash]++;
ret += buckets[hash]->insertSmallSideRow(row);
}
}
boost::filesystem::remove(smallFilename);
smallFilename.clear();
for (i = 0; i < (int) bucketCount; i++)
if (rowDist[i] == rowCount)
throw IDBExcept("All rows hashed to the same bucket", ERR_DBJ_DATA_DISTRIBUTION);
rg.setData(&buffer);
rg.resetRowGroup(0);
rg.getRow(0, &row);
return ret;
}
/* either forwards the specified buffer to the next level of JP's or
writes it to a file, returns the # of bytes written to the file */
int64_t JoinPartition::processSmallBuffer()
{
int64_t ret;
ret = processSmallBuffer(buffer);
smallRG.resetRowGroup(0);
smallRG.getRow(0, &smallRow);
return ret;
}
int64_t JoinPartition::processSmallBuffer(RGData &rgData)
{
RowGroup &rg = smallRG;
Row &row = smallRow;
int64_t ret = 0;
rg.setData(&rgData);
//if (rootNode)
//cout << "smallside RGData: " << rg.toString() << endl;
if (fileMode) {
ByteStream bs;
rg.serializeRGData(bs);
//cout << "writing RGData: " << rg.toString() << endl;
ret = writeByteStream(0, bs);
//cout << "wrote " << ret << " bytes" << endl;
/* Check whether this partition is now too big -> convert to split mode.
The current estimate is based on 100M 4-byte rows = 4GB. The total size is
the amount stored in RowGroups in mem + the size of the hash table. The RowGroups
in that case use 600MB, so 3.4GB is used by the hash table. 3.4GB/100M rows = 34 bytes/row
*/
htSizeEstimate += rg.getDataSize() + (34 * rg.getRowCount());
if (htSizeEstimate > htTargetSize)
ret += convertToSplitMode();
//cout << "wrote some data, returning " << ret << endl;
}
else {
uint64_t hash, tmp;
int i, j;
for (i = 0; i < (int) rg.getRowCount(); i++) {
rg.getRow(i, &row);
if (antiWithMatchNulls && hasNullJoinColumn(row)) {
if (needsAllNullRows || !gotNullRow) {
for (j = 0; j < (int) bucketCount; j++)
ret += buckets[j]->insertSmallSideRow(row);
gotNullRow = true;
}
continue;
}
if (typelessJoin)
hash = getHashOfTypelessKey(row, smallKeyCols, hashSeed) % bucketCount;
else {
if (UNLIKELY(row.isUnsigned(smallKeyCols[0])))
tmp = row.getUintField(smallKeyCols[0]);
else
tmp = row.getIntField(smallKeyCols[0]);
hash = hasher((char *) &tmp, 8, hashSeed);
hash = hasher.finalize(hash, 8) % bucketCount;
}
//cout << "hashing smallside row: " << row.toString() << endl;
ret += buckets[hash]->insertSmallSideRow(row);
}
//cout << "distributed rows, returning " << ret << endl;
}
smallSizeOnDisk += ret;
return ret;
}
/* the difference between processSmall & processLarge is mostly the names of
variables being small* -> large*, template? */
int64_t JoinPartition::processLargeBuffer()
{
int64_t ret;
ret = processLargeBuffer(buffer);
largeRG.resetRowGroup(0);
largeRG.getRow(0, &largeRow);
return ret;
}
int64_t JoinPartition::processLargeBuffer(RGData &rgData)
{
RowGroup &rg = largeRG;
Row &row = largeRow;
int64_t ret = 0;
int i, j;
rg.setData(&rgData);
//if (rootNode)
// cout << "largeside RGData: " << rg.toString() << endl;
/* Need to fail a query with an anti join, an FE filter, and a NULL row on the
large side b/c it needs to be joined with the entire small side table. */
if (antiWithMatchNulls && needsAllNullRows) {
rg.getRow(0, &row);
for (i = 0; i < (int) rg.getRowCount(); i++, row.nextRow()) {
for (j = 0; j < (int) largeKeyCols.size(); j++) {
if (row.isNullValue(largeKeyCols[j]))
throw QueryDataExcept("", ERR_DBJ_ANTI_NULL);
}
}
}
if (fileMode) {
ByteStream bs;
rg.serializeRGData(bs);
//cout << "writing large RGData: " << rg.toString() << endl;
ret = writeByteStream(1, bs);
//cout << "wrote " << ret << " bytes" << endl;
}
else {
uint64_t hash, tmp;
int i;
for (i = 0; i < (int) rg.getRowCount(); i++) {
rg.getRow(i, &row);
if (typelessJoin)
hash = getHashOfTypelessKey(row, largeKeyCols, hashSeed) % bucketCount;
else {
if (UNLIKELY(row.isUnsigned(largeKeyCols[0])))
tmp = row.getUintField(largeKeyCols[0]);
else
tmp = row.getIntField(largeKeyCols[0]);
hash = hasher((char *) &tmp, 8, hashSeed);
hash = hasher.finalize(hash, 8) % bucketCount;
}
//cout << "large side hashing row: " << row.toString() << endl;
ret += buckets[hash]->insertLargeSideRow(row);
}
}
largeSizeOnDisk += ret;
return ret;
}
bool JoinPartition::getNextPartition(vector<RGData> *smallData, uint64_t *partitionID, JoinPartition **jp)
{
if (fileMode) {
ByteStream bs;
RGData rgData;
if (nextPartitionToReturn > 0)
return false;
//cout << "reading the small side" << endl;
nextSmallOffset = 0;
while (1) {
readByteStream(0, &bs);
if (bs.length() == 0)
break;
rgData.deserialize(bs);
//smallRG.setData(&rgData);
//cout << "read a smallRG with " << smallRG.getRowCount() << " rows" << endl;
smallData->push_back(rgData);
}
nextPartitionToReturn = 1;
*partitionID = uniqueID;
*jp = this;
return true;
}
bool ret = false;
while (!ret && nextPartitionToReturn < bucketCount) {
ret = buckets[nextPartitionToReturn]->getNextPartition(smallData, partitionID, jp);
if (!ret)
nextPartitionToReturn++;
}
return ret;
}
boost::shared_ptr<RGData> JoinPartition::getNextLargeRGData()
{
boost::shared_ptr<RGData> ret;
ByteStream bs;
readByteStream(1, &bs);
if (bs.length() != 0) {
ret.reset(new RGData());
ret->deserialize(bs);
}
else {
boost::filesystem::remove(largeFilename);
largeSizeOnDisk = 0;
}
return ret;
}
bool JoinPartition::hasNullJoinColumn(Row &r)
{
for (uint32_t i = 0; i < smallKeyCols.size(); i++) {
if (r.isNullValue(smallKeyCols[i]))
return true;
}
return false;
}
void JoinPartition::initForProcessing()
{
int i;
nextPartitionToReturn = 0;
if (!fileMode)
for (i = 0; i < (int) bucketCount; i++)
buckets[i]->initForProcessing();
else
nextLargeOffset = 0;
}
void JoinPartition::initForLargeSideFeed()
{
int i;
if (!rootNode) {
buffer.reinit(largeRG);
largeRG.setData(&buffer);
largeRG.resetRowGroup(0);
largeRG.getRow(0, &largeRow);
}
largeSizeOnDisk = 0;
if (fileMode)
nextLargeOffset = 0;
else
for (i = 0; i < (int) bucketCount; i++)
buckets[i]->initForLargeSideFeed();
}
void JoinPartition::saveSmallSidePartition(vector<RGData> &rgData)
{
//cout << "JP: saving partition: " << id << endl;
htSizeEstimate = 0;
smallSizeOnDisk = 0;
nextSmallOffset = 0;
boost::filesystem::remove(smallFilename);
insertSmallSideRGData(rgData);
doneInsertingSmallData();
}
void JoinPartition::readByteStream(int which, ByteStream *bs)
{
size_t &offset = (which == 0 ? nextSmallOffset : nextLargeOffset);
fstream &fs = (which == 0 ? smallFile : largeFile);
const char *filename = (which == 0 ? smallFilename.c_str() : largeFilename.c_str());
size_t len;
bs->restart();
fs.open(filename, ios::binary | ios::in);
int saveErrno = errno;
if (!fs) {
fs.close();
ostringstream os;
os << "Disk join could not open file (read access) " << filename << ": " << strerror(saveErrno) << endl;
throw IDBExcept(os.str().c_str(), ERR_DBJ_FILE_IO_ERROR);
}
fs.seekg(offset);
fs.read((char *) &len, sizeof(len));
saveErrno = errno;
if (!fs) {
if (fs.eof()) {
fs.close();
return;
}
else {
fs.close();
ostringstream os;
os << "Disk join could not read file " << filename << ": " << strerror(saveErrno) << endl;
throw IDBExcept(os.str().c_str(), ERR_DBJ_FILE_IO_ERROR);
}
}
idbassert(len != 0);
totalBytesRead += sizeof(len);
if (!useCompression) {
bs->needAtLeast(len);
fs.read((char *) bs->getInputPtr(), len);
saveErrno = errno;
if (!fs) {
fs.close();
ostringstream os;
os << "Disk join could not read file " << filename << ": " << strerror(saveErrno) << endl;
throw IDBExcept(os.str().c_str(), ERR_DBJ_FILE_IO_ERROR);
}
totalBytesRead += len;
bs->advanceInputPtr(len);
}
else {
size_t uncompressedSize;
boost::scoped_array<char> buf(new char[len]);
fs.read(buf.get(), len);
saveErrno = errno;
if (!fs) {
fs.close();
ostringstream os;
os << "Disk join could not read file " << filename << ": " << strerror(saveErrno) << endl;
throw IDBExcept(os.str().c_str(), ERR_DBJ_FILE_IO_ERROR);
}
totalBytesRead += len;
compressor.getUncompressedSize(buf.get(), len, &uncompressedSize);
bs->needAtLeast(uncompressedSize);
compressor.uncompress(buf.get(), len, (char *) bs->getInputPtr());
bs->advanceInputPtr(uncompressedSize);
}
offset = fs.tellg();
fs.close();
}
uint64_t JoinPartition::writeByteStream(int which, ByteStream &bs)
{
size_t &offset = (which == 0 ? nextSmallOffset : nextLargeOffset);
fstream &fs = (which == 0 ? smallFile : largeFile);
const char *filename = (which == 0 ? smallFilename.c_str() : largeFilename.c_str());
fs.open(filename, ios::binary | ios::out | ios::app);
int saveErrno = errno;
if (!fs) {
fs.close();
ostringstream os;
os << "Disk join could not open file (write access) " << filename << ": " << strerror(saveErrno) << endl;
throw IDBExcept(os.str().c_str(), ERR_DBJ_FILE_IO_ERROR);
}
uint64_t ret = 0;
size_t len = bs.length();
idbassert(len != 0);
fs.seekp(offset);
if (!useCompression) {
ret = len + 4;
fs.write((char *) &len, sizeof(len));
fs.write((char *) bs.buf(), len);
saveErrno = errno;
if (!fs) {
fs.close();
ostringstream os;
os << "Disk join could not write file " << filename << ": " << strerror(saveErrno) << endl;
throw IDBExcept(os.str().c_str(), ERR_DBJ_FILE_IO_ERROR);
}
totalBytesWritten += sizeof(len) + len;
}
else {
uint64_t maxSize = compressor.maxCompressedSize(len);
size_t actualSize;
boost::scoped_array<uint8_t> compressed(new uint8_t[maxSize]);
compressor.compress((char *) bs.buf(), len, (char *) compressed.get(), &actualSize);
ret = actualSize + 4;
fs.write((char *) &actualSize, sizeof(actualSize));
fs.write((char *) compressed.get(), actualSize);
saveErrno = errno;
if (!fs) {
fs.close();
ostringstream os;
os << "Disk join could not write file " << filename << ": " << strerror(saveErrno) << endl;
throw IDBExcept(os.str().c_str(), ERR_DBJ_FILE_IO_ERROR);
}
totalBytesWritten += sizeof(actualSize) + actualSize;
}
bs.advance(len);
offset = fs.tellp();
fs.close();
return ret;
}
uint64_t JoinPartition::getBytesRead()
{
uint64_t ret;
if (fileMode)
return totalBytesRead;
ret = totalBytesRead;
for (int i = 0; i < (int) bucketCount; i++)
ret += buckets[i]->getBytesRead();
return ret;
}
uint64_t JoinPartition::getBytesWritten()
{
uint64_t ret;
if (fileMode)
return totalBytesWritten;
ret = totalBytesWritten;
for (int i = 0; i < (int) bucketCount; i++)
ret += buckets[i]->getBytesWritten();
return ret;
}
} // namespace