This is part of https://github.com/certbot/certbot/issues/8782. I took it on now because the currently pinned version of `pylint` doesn't work with newer versions of `poetry` which I wanted to upgrade as part of https://github.com/certbot/certbot/issues/8787.
To say a bit more about the specific changes in this PR:
* Newer versions of `pylint` complain if `Popen` isn't used as a context manager. Instead of making this change, I switched to using `subprocess.run` which is simpler and [recommended in the Python docs](https://docs.python.org/3/library/subprocess.html#using-the-subprocess-module). I also disabled this check in a few places where no longer using `Popen` would require significant refactoring.
* The deleted code in `certbot/certbot/_internal/renewal.py` is cruft since https://github.com/certbot/certbot/pull/8685.
* The unused argument to `enable_mod` in the Apache plugin is used in some over the override classes that subclass that class.
* unpin pylint and repin dependencies
* disable raise-missing-from
* disable wrong-input-order
* remove unused code
* misc lint fixes
* remove unused import
* various lint fixes
* Fix dangerous default argument
* Remove unused imports
* Remove unnecessary comprehension
* Use literal syntax to create data structure
* Use literal syntax instead of function calls to create data structure
Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com>
